{ "_id": "6a101ac7acfb0bcc41c86adc", "Type": "Package", "Package": "bamm", "Title": "Species Distribution Models as a Function of Biotic, Abiotic and\nMovement Factors (BAM)", "Version": "0.7.1", "Authors@R": "c(\nperson(\"Luis\", \"Osorio-Olvera\",\nemail = \"luismurao@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0701-5398\")),\nperson(\"Jorge\", \"Soberón\",\nemail = \"soberon@ku.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-2160-4148\")),\nperson(\"Rusby G.\", \"Contreras-Díaz\",\nemail = \"rusby.contreras.diaz@gmail.com\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-0569-8984\"))\n)", "Maintainer": "Luis Osorio-Olvera ", "Description": "Species Distribution Modeling (SDM) is a practical\nmethodology that aims to estimate the area of distribution of a\nspecies. However, most of the work has focused on estimating\nstatic expressions of the correlation between environmental\nvariables. The outputs of correlative species distribution\nmodels can be interpreted as maps of the suitable environment\nfor a species but not generally as maps of its actual\ndistribution. Soberón and Peterson (2005)\n presented the BAM scheme, a heuristic\nframework that states that the occupied area of a species\noccurs on sites that have been accessible through dispersal (M)\nand have both favorable biotic (B) and abiotic conditions (A).\nThe 'bamm' package implements classes and functions to operate\non each element of the BAM and by using a cellular automata\nmodel where the occupied area of a species at time t is\nestimated by the multiplication of three binary matrices: one\nmatrix represents movements (M), another abiotic -niche-\ntolerances (A), and a third, biotic interactions (B). The\ntheoretical background of the package can be found in Soberón\nand Osorio-Olvera (2023) .", "License": "GPL (>= 3)", "URL": "https://luismurao.github.io/bamm/", "BugReports": "https://github.com/luismurao/bamm/issues", "VignetteBuilder": "knitr", "RdMacros": "Rdpack", "Config/testthat/edition": "3", "Encoding": "UTF-8", "NeedsCompilation": "yes", "RoxygenNote": "7.3.2", "SystemRequirements": "GDAL (>= 2.2.3): gdal-bin (deb), libgdal-dev (deb)\nor gdal-devel (rmp), GEOS (>= 3.4.0), PROJ (>= 4.9.3):\nlibproj-dev (deb), sqlite3, ImageMagick++: imagemagick (deb),\nlibmagic-dev (deb), libmagick++-dev (deb) or\nImageMagick-c++-devel (rpm) ImageMagick\n(http://imagemagick.org) or GraphicsMagick\n(http://www.graphicsmagick.org) or LyX (http://www.lyx.org) for\nsaveGIF(); (PDF)LaTeX for saveLatex(); SWF Tools\n(http://swftools.org) for saveSWF(); FFmpeg (http://ffmpeg.org)\nor avconv (https://libav.org/avconv.html) for saveVideo()", "Packaged": { "Date": "2026-05-14 09:33:17 UTC", "User": "root" }, "Author": "Luis Osorio-Olvera [aut, cre]\n(), Jorge Soberón [aut]\n(), Rusby G.\nContreras-Díaz [ctb] ()", "Language": "en-US", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibglpk-dev make libmagick++-dev gsfonts texlive libmagic-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev", "Repository": "https://luismurao.r-universe.dev", "Date/Publication": "2026-04-14 19:15:05 UTC", "RemoteUrl": "https://github.com/luismurao/bamm", "RemoteRef": "HEAD", "RemoteSha": "35a95bb3c25fb661c683e6d8d2e6c775012b706c", "MD5sum": "15a7d5ebfa2471b689c7a243fd36816d", "_user": "luismurao", "_type": "src", "_file": "bamm_0.7.1.tar.gz", "_fileid": "ee0b4eb6d51d4e222533779e12f81f21b7f4512f010bc553b4fa645fa1bd9389", "_filesize": 1587570, "_sha256": "ee0b4eb6d51d4e222533779e12f81f21b7f4512f010bc553b4fa645fa1bd9389", "_created": "2026-05-14T09:33:17.000Z", "_published": "2026-05-22T08:58:47.062Z", "_distro": "noble", "_jobs": [ { 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"title": "pam2richness: Converts Presence Absence Matrix (pam object) to richness raster", "topics": [ "pam2richness" ] }, { "page": "permute_pam", "title": "permute_pam: Function to permute a Presence-Absence-Matrix.", "topics": [ "permute_pam" ] }, { "page": "plot", "title": "Plot method for objects of class diversity_range 'bamm'.", "topics": [ "plot,diversity_range,ANY-method" ] }, { "page": "pol2pam", "title": "Convert distribution polygons to a presence-absence matrix (PAM)", "topics": [ "pol2pam" ] }, { "page": "predict", "title": "Predict method of the package 'bamm'.", "topics": [ "bam-method", "predict", "predict,bam-method" ] }, { "page": "sdm_sim", "title": "sdm_sim: Simulate single species dispersal dynamics using the BAM framework.", "topics": [ "sdm_sim" ] }, { "page": "setA", "title": "Class for the A (Abiotic) Set of BAM Diagram", "topics": [ "A-class", "setA", "setA-class" ] }, { "page": "setM-class", "title": "Class for the M set of the 'bamm' diagram", "topics": [ 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